Selected Publications

[1]  Lloyd JP, Tsai ZTY, Sowers RP, Panchy NL, Shiu SH*. (2018) A model-based approach for identifying functional intergenic transcribed regions and non-coding RNAs. Mol. Biol. Evol. 36(6):1422-1436. doi: 10.1093/molbev/msy035

[2]  Uygun S, Seddon AE, Azodi C, Shiu SH (2017) Predictive models of spatial transcriptional response to high salinity. Plant Physiol. 174:450-464. https://doi.org/10.1104/pp.16.01828

[3]  Tsai ZTY, Lloyd J, Shiu SH (2017) Defining functional, genic regions in the human genome through integration of biochemical, evolutionary, and genetic evidence. Mol. Biol. Evol. 34(7):1788-1798. https://doi.org/10.1093/molbev/msx101

[4]  Uygun S, Peng C, Lehti-Shiu MD, Last R, Shiu SH. (2016) Utility and limitations of using gene expression data to identify functional associations. PLoS Comp Biol 12(12):e1005244. https://doi.org/10.1371/journal.pcbi.1005244

[5]  Liu MJ, Seddon AE, Tsai ZTY, Major IT, Floer M, Howe GA, Shiu SH (2015) Determinants of nucleosome positioning and their influence on plant gene expression. Genome Res. 25(8):1182-95. https://doi.org/10.1101/gr.188680.114

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